To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("genoset")

In most cases, you don't need to download the package archive at all.

genoset

Provides classes similar to ExpressionSet for copy number analysis

Bioconductor version: Release (2.14)

Load, manipulate, and plot copynumber and BAF data. GenoSet class extends eSet by adding a "locData" slot for a RangedData or GRanegs object. This object contains feature genome location data and provides for efficient subsetting on genome location. CNSet and BAFSet extend GenoSet and require assayData matrices for Copy Number (cn) or Log-R Ratio (lrr) and B-Allele Frequency (baf) data. Implements and provides convenience functions for processing of copy number and B-Allele Frequency data.

Author: Peter M. Haverty

Maintainer: Peter M. Haverty <phaverty at gene.com>

To install this package, start R and enter:

Citation (from within R, enter citation("genoset")):

Installation

source("http://bioconductor.org/biocLite.R")
biocLite("genoset")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("genoset")

 

PDF R Script genoset
PDF   Reference Manual
Text   NEWS

Details

biocViews CopyNumberVariation, DataRepresentation, Infrastructure, Microarray, SNP, Software
Version 1.16.2
In Bioconductor since BioC 2.8 (R-2.13)
License Artistic-2.0
Depends R (>= 2.10), BiocGenerics(>= 0.1.6), Biobase(>= 2.15.1), IRanges, GenomicRanges
Imports methods, graphics
Suggests RUnit, DNAcopy, stats, BSgenome, Biostrings
System Requirements
URL
Depends On Me VegaMC
Imports Me methyAnalysis
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source genoset_1.16.2.tar.gz
Windows Binary genoset_1.16.2.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) genoset_1.16.2.tgz
Mac OS X 10.9 (Mavericks) genoset_1.16.2.tgz
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