domainsignatures

Geneset enrichment based on InterPro domain signatures

Bioconductor version: Release (2.14)

Find significantly enriched gene classifications in a list of functionally undescribed genes based on their InterPro domain structure.

Author: Florian Hahne, Tim Beissbarth

Maintainer: Florian Hahne <florian.hahne at novartis.com>

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("domainsignatures")

Citation (from within R, enter citation("domainsignatures")):

Documentation

PDF R Script Gene set enrichment using InterPro domain signatures
PDF   Reference Manual

Details

biocViews Annotation, GeneSetEnrichment, Pathways, Software
Version 1.24.0
In Bioconductor since BioC 2.3 (R-2.8)
License Artistic-2.0
Depends R (>= 2.4.0), KEGG.db, prada, biomaRt, methods
Imports AnnotationDbi
Suggests
System Requirements
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Depends On Me
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Package Downloads

Package Source domainsignatures_1.24.0.tar.gz
Windows Binary domainsignatures_1.24.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) domainsignatures_1.24.0.tgz
Mac OS X 10.9 (Mavericks) domainsignatures_1.24.0.tgz
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