To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("clonotypeR")

In most cases, you don't need to download the package archive at all.

clonotypeR

 

   

High throughput analysis of T cell antigen receptor sequences

Bioconductor version: Release (3.2)

High throughput analysis of T cell antigen receptor sequences The genes encoding T cell receptors are created by somatic recombination, generating an immense combination of V, (D) and J segments. Additional processes during the recombination create extra sequence diversity between the V an J segments. Collectively, this hyper-variable region is called the CDR3 loop. . The purpose of this package is to process and quantitatively analyse millions of V-CDR3-J combination, called clonotypes, from multiple sequence libraries.

Author: Charles Plessy <plessy at riken.jp>

Maintainer: Charles Plessy <plessy at riken.jp>

Citation (from within R, enter citation("clonotypeR")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("clonotypeR")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("clonotypeR")

 

HTML clonotypeR User's Guide
PDF   Reference Manual
Text   README
Text   NEWS
Text   LICENSE

Details

biocViews Sequencing, Software
Version 1.8.0
In Bioconductor since BioC 2.13 (R-3.0) (2.5 years)
License file LICENSE
Depends
Imports methods
LinkingTo
Suggests BiocGenerics, edgeR, knitr, pvclust, RUnit, vegan
SystemRequirements
Enhances
URL
BugReports http://clonotyper.branchable.com/Bugs/
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source clonotypeR_1.8.0.tar.gz
Windows Binary clonotypeR_1.8.0.zip
Mac OS X 10.6 (Snow Leopard) clonotypeR_1.8.0.tgz
Mac OS X 10.9 (Mavericks) clonotypeR_1.8.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/clonotypeR/tree/release-3.2
Package Short Url http://bioconductor.org/packages/clonotypeR/
Package Downloads Report Download Stats

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