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A package for secondary analysis of fusion products

Bioconductor version: Release (3.1)

This package facilitates the characterisation of fusion products events. It allows to import fusion data results from the following fusion finders: chimeraScan, bellerophontes, deFuse, FusionFinder, FusionHunter, mapSplice, tophat-fusion, FusionMap, STAR, Rsubread, fusionCatcher.

Author: Raffaele A Calogero, Matteo Carrara, Marco Beccuti, Francesca Cordero

Maintainer: Raffaele A Calogero <raffaele.calogero at>

Citation (from within R, enter citation("chimera")):


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PDF R Script chimera
PDF   Reference Manual
Text   NEWS


biocViews Infrastructure, Software
Version 1.10.0
In Bioconductor since BioC 2.12 (R-3.0) (2.5 years)
License Artistic-2.0
Depends Biobase, GenomicRanges(>= 1.13.3), Rsamtools(>= 1.13.1), GenomicAlignments, methods, AnnotationDbi, BSgenome.Hsapiens.UCSC.hg19, TxDb.Hsapiens.UCSC.hg19.knownGene, Homo.sapiens
Suggests BiocParallel, geneplotter
SystemRequirements STAR, TopHat, bowtie and samtools are required for some functionalities
Enhances Rsubread, BSgenome.Mmusculus.UCSC.mm9, TxDb.Mmusculus.UCSC.mm9.knownGene, BSgenome.Mmusculus.UCSC.mm10, TxDb.Mmusculus.UCSC.mm10.knownGene, Mus.musculus, BSgenome.Hsapiens.NCBI.GRCh38, TxDb.Hsapiens.UCSC.hg38.knownGene
Depends On Me oneChannelGUI
Imports Me
Suggests Me
Build Report  

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Package Source chimera_1.10.0.tar.gz
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Mac OS X 10.6 (Snow Leopard) chimera_1.10.0.tgz
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