To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("chimera")

In most cases, you don't need to download the package archive at all.

chimera

 

A package for secondary analysis of fusion products

Bioconductor version: Release (3.1)

This package facilitates the characterisation of fusion products events. It allows to import fusion data results from the following fusion finders: chimeraScan, bellerophontes, deFuse, FusionFinder, FusionHunter, mapSplice, tophat-fusion, FusionMap, STAR, Rsubread, fusionCatcher.

Author: Raffaele A Calogero, Matteo Carrara, Marco Beccuti, Francesca Cordero

Maintainer: Raffaele A Calogero <raffaele.calogero at unito.it>

Citation (from within R, enter citation("chimera")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("chimera")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("chimera")

 

PDF R Script chimera
PDF   Reference Manual
Text   NEWS

Details

biocViews Infrastructure, Software
Version 1.10.0
In Bioconductor since BioC 2.12 (R-3.0) (2.5 years)
License Artistic-2.0
Depends Biobase, GenomicRanges(>= 1.13.3), Rsamtools(>= 1.13.1), GenomicAlignments, methods, AnnotationDbi, BSgenome.Hsapiens.UCSC.hg19, TxDb.Hsapiens.UCSC.hg19.knownGene, Homo.sapiens
Imports
LinkingTo
Suggests BiocParallel, geneplotter
SystemRequirements STAR, TopHat, bowtie and samtools are required for some functionalities
Enhances Rsubread, BSgenome.Mmusculus.UCSC.mm9, TxDb.Mmusculus.UCSC.mm9.knownGene, BSgenome.Mmusculus.UCSC.mm10, TxDb.Mmusculus.UCSC.mm10.knownGene, Mus.musculus, BSgenome.Hsapiens.NCBI.GRCh38, TxDb.Hsapiens.UCSC.hg38.knownGene
URL
Depends On Me oneChannelGUI
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source chimera_1.10.0.tar.gz
Windows Binary chimera_1.10.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) chimera_1.10.0.tgz
Mac OS X 10.9 (Mavericks) chimera_1.10.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/chimera/tree/release-3.1
Package Short Url http://bioconductor.org/packages/chimera/
Package Downloads Report Download Stats

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