chimera

A package for secondary analysis of fusion products

Bioconductor version: Release (2.14)

This package facilitates the characterisation of fusion products events. It allows to import fusion data results from the following fusion finders: chimeraScan, bellerophontes, deFuse, FusionFinder, FusionHunter, mapSplice, tophat-fusion, FusionMap, STAR.

Author: Raffaele A Calogero, Matteo Carrara, Marco Beccuti, Francesca Cordero

Maintainer: Raffaele A Calogero <raffaele.calogero at unito.it>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("chimera")

To cite this package in a publication, start R and enter:

    citation("chimera")

Documentation

PDF R Script chimera
PDF   Reference Manual
Text   NEWS

Details

biocViews Infrastructure, Software
Version 1.6.0
In Bioconductor since BioC 2.12 (R-3.0)
License Artistic-2.0
Depends Biobase, GenomicRanges(>= 1.13.3), Rsamtools(>= 1.13.1), GenomicAlignments, methods, AnnotationDbi, org.Hs.eg.db, BSgenome.Hsapiens.UCSC.hg19, TxDb.Hsapiens.UCSC.hg19.knownGene
Imports
Suggests BiocParallel
System Requirements STAR, TopHat, bowtie and samtools are required for some functionalities
URL
Depends On Me oneChannelGUI
Imports Me
Suggests Me

Package Downloads

Package Source chimera_1.6.0.tar.gz
Windows Binary chimera_1.6.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) chimera_1.6.0.tgz
Mac OS X 10.9 (Mavericks)
Package Downloads Report Download Stats

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