To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("asmn")

In most cases, you don't need to download the package archive at all.

asmn

All sample mean normalization.

Bioconductor version: Release (2.14)

Performs all sample mean normalization using raw data output from BeadStudio and MethyLumiM data.

Author: 'Anna Decker <deckera at berkeley.edu> [aut,cre], Paul Yousefi <yousefi at berkeley.edu> [aut,cre]'

Maintainer: Anna Decker <deckera at berkeley.edu>

Citation (from within R, enter citation("asmn")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("asmn")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("asmn")

 

PDF R Script Vignette for R package asmn
PDF   Reference Manual

Details

biocViews DNAMethylation, Preprocessing, QualityControl, Software, TwoChannel
Version 1.0.0
In Bioconductor since BioC 2.14 (R-3.1)
License GPL-3
Depends R (>= 3.0.2)
Imports methylumi, stats, Biobase
Suggests TCGAMethylation450k, IlluminaHumanMethylation450k.db
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source asmn_1.0.0.tar.gz
Windows Binary asmn_1.0.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) asmn_1.0.0.tgz
Mac OS X 10.9 (Mavericks) asmn_1.0.0.tgz
Browse/checkout source (username/password: readonly)
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