To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("affyPara")

In most cases, you don't need to download the package archive at all.

affyPara

 

Parallelized preprocessing methods for Affymetrix Oligonucleotide Arrays

Bioconductor version: Release (3.1)

The package contains parallelized functions for exploratory oligonucleotide array analysis. The package is designed for large numbers of microarray data.

Author: Markus Schmidberger <schmidb at ibe.med.uni-muenchen.de>, Esmeralda Vicedo <e.vicedo at gmx.net>, Ulrich Mansmann <mansmann at ibe.med.uni-muenchen.de>

Maintainer: Markus Schmidberger <MSchmidberger at freenet.de>

Citation (from within R, enter citation("affyPara")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("affyPara")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("affyPara")

 

PDF R Script Parallelized affy functions for preprocessing
PDF R Script Simulation Study for VSN Add-On Normalization and Subsample Size
PDF   Reference Manual
Text   README
Text   NEWS

Details

biocViews Microarray, Preprocessing, Software
Version 1.28.0
In Bioconductor since BioC 2.2 (R-2.7) (7 years)
License GPL-3
Depends R (>= 2.5.0), methods, affy(>= 1.20.0), snow (>= 0.2-3), vsn(>= 3.6.0), aplpack (>= 1.1.1), affyio
Imports
LinkingTo
Suggests affydata
SystemRequirements
Enhances affy
URL http://www.ibe.med.uni-muenchen.de
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source affyPara_1.28.0.tar.gz
Windows Binary affyPara_1.28.0.zip
Mac OS X 10.6 (Snow Leopard) affyPara_1.28.0.tgz
Mac OS X 10.9 (Mavericks) affyPara_1.28.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/affyPara/tree/release-3.1
Package Short Url http://bioconductor.org/packages/affyPara/
Package Downloads Report Download Stats

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