To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("RamiGO")

In most cases, you don't need to download the package archive at all.

RamiGO

AmiGO visualize R interface

Bioconductor version: Release (3.0)

R interface sending requests to AmiGO visualize, retrieving DAG GO trees, parsing GraphViz DOT format files and exporting GML files for Cytoscape. Also uses RCytoscape to interactively display AmiGO trees in Cytoscape.

Author: Markus Schroeder, Daniel Gusenleitner, John Quackenbush, Aedin Culhane, Benjamin Haibe-Kains

Maintainer: Markus Schroeder <mschroed at jimmy.harvard.edu>

Citation (from within R, enter citation("RamiGO")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("RamiGO")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RamiGO")

 

PDF R Script RamiGO: An Introduction (HowTo)
PDF   Reference Manual
Text   NEWS

Details

biocViews Classification, GO, GraphAndNetwork, Software, ThirdPartyClient, Visualization
Version 1.12.0
In Bioconductor since BioC 2.9 (R-2.14)
License Artistic-2.0
Depends gsubfn, methods
Imports igraph, RCurl, png, RCytoscape, graph
Suggests
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source RamiGO_1.12.0.tar.gz
Windows Binary RamiGO_1.12.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) RamiGO_1.12.0.tgz
Mac OS X 10.9 (Mavericks) RamiGO_1.12.0.tgz
Browse/checkout source (username/password: readonly)
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