To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("RCytoscape")

In most cases, you don't need to download the package archive at all.

RCytoscape

 

Display and manipulate graphs in Cytoscape

Bioconductor version: Release (3.1)

Interactvive viewing and exploration of graphs, connecting R to Cytoscape.

Author: Paul Shannon

Maintainer: Paul Shannon <pshannon at fhcrc.org>

Citation (from within R, enter citation("RCytoscape")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("RCytoscape")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RCytoscape")

 

PDF R Script RCytoscape Overview
PDF   Reference Manual
Text   README
Text   NEWS

Details

biocViews GraphAndNetwork, Software, ThirdPartyClient, Visualization
Version 1.18.0
In Bioconductor since BioC 2.7 (R-2.12) (4.5 years)
License GPL-2
Depends R (>= 2.14.0), graph(>= 1.31.0), XMLRPC (>= 0.2.4)
Imports methods, XMLRPC, BiocGenerics
LinkingTo
Suggests RUnit
SystemRequirements
Enhances
URL http://rcytoscape.systemsbiology.net
Depends On Me
Imports Me categoryCompare, NCIgraph, RamiGO
Suggests Me clipper, GeneNetworkBuilder, graphite, mmnet, NetPathMiner
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source RCytoscape_1.18.0.tar.gz
Windows Binary RCytoscape_1.18.0.zip
Mac OS X 10.6 (Snow Leopard) RCytoscape_1.18.0.tgz
Mac OS X 10.9 (Mavericks) RCytoscape_1.18.0.tgz
Browse/checkout source (username/password: readonly)
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations:

Fred Hutchinson Cancer Research Center