To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("Polyfit")

In most cases, you don't need to download the package archive at all.

Polyfit

 

   

Add-on to DESeq to improve p-values and q-values

Bioconductor version: Release (3.5)

Polyfit is an add-on to the packages DESeq which ensures the p-value distribution is uniform over the interval [0, 1] for data satisfying the null hypothesis of no differential expression, and uses an adpated Storey-Tibshiran method to calculate q-values.

Author: Conrad Burden

Maintainer: Conrad Burden <conrad.burden at anu.edu.au>

Citation (from within R, enter citation("Polyfit")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("Polyfit")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Polyfit")

 

PDF R Script Polyfit
PDF   Reference Manual

Details

biocViews DifferentialExpression, GeneExpression, RNASeq, Sequencing, Software
Version 1.10.0
In Bioconductor since BioC 3.0 (R-3.1) (2.5 years)
License GPL (>= 3)
Depends DESeq
Imports
LinkingTo
Suggests BiocStyle
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source Polyfit_1.10.0.tar.gz
Windows Binary Polyfit_1.10.0.zip
Mac OS X 10.11 (El Capitan) Polyfit_1.10.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/Polyfit/tree/release-3.5
Package Short Url http://bioconductor.org/packages/Polyfit/
Package Downloads Report Download Stats

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