PGSEA

Parametric Gene Set Enrichment Analysis

Bioconductor version: Release (2.14)

Parametric Analysis of Gene Set Enrichment

Author: Kyle Furge <kyle.furge at vai.org> and Karl Dykema <karl.dykema at vai.org>

Maintainer: Karl Dykema <karl.dykema at vai.org>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("PGSEA")

To cite this package in a publication, start R and enter:

    citation("PGSEA")

Documentation

PDF R Script HOWTO: PGSEA
PDF R Script HOWTO: PGSEA Example Workflow
PDF   Reference Manual

Details

biocViews Microarray, Software
Version 1.38.0
In Bioconductor since BioC 2.0 (R-2.5)
License GPL-2
Depends R (>= 2.10), GO.db, KEGG.db, AnnotationDbi, annaffy, methods, Biobase(>= 2.5.5)
Imports
Suggests GSEABase, GEOquery, org.Hs.eg.db, hgu95av2.db, limma
System Requirements
URL
Depends On Me GeneExpressionSignature
Imports Me
Suggests Me

Package Downloads

Package Source PGSEA_1.38.0.tar.gz
Windows Binary PGSEA_1.38.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) PGSEA_1.38.0.tgz
Mac OS X 10.9 (Mavericks)
Package Downloads Report Download Stats

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