To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("PGSEA")

In most cases, you don't need to download the package archive at all.

PGSEA

Parametric Gene Set Enrichment Analysis

Bioconductor version: Release (3.0)

Parametric Analysis of Gene Set Enrichment

Author: Kyle Furge <kyle.furge at vai.org> and Karl Dykema <karl.dykema at vai.org>

Maintainer: Karl Dykema <karl.dykema at vai.org>

Citation (from within R, enter citation("PGSEA")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("PGSEA")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("PGSEA")

 

PDF R Script HOWTO: PGSEA
PDF R Script HOWTO: PGSEA Example Workflow
PDF   Reference Manual

Details

biocViews Microarray, Software
Version 1.40.0
In Bioconductor since BioC 2.0 (R-2.5)
License GPL-2
Depends R (>= 2.10), GO.db, KEGG.db, AnnotationDbi, annaffy, methods, Biobase(>= 2.5.5)
Imports
LinkingTo
Suggests GSEABase, GEOquery, org.Hs.eg.db, hgu95av2.db, limma
SystemRequirements
Enhances
URL
Depends On Me GeneExpressionSignature
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source PGSEA_1.40.0.tar.gz
Windows Binary PGSEA_1.40.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) PGSEA_1.40.0.tgz
Mac OS X 10.9 (Mavericks) PGSEA_1.40.0.tgz
Browse/checkout source (username/password: readonly)
Package Downloads Report Download Stats

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