To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("MotIV")

In most cases, you don't need to download the package archive at all.

MotIV

Motif Identification and Validation

Bioconductor version: Release (2.14)

This package makes use of STAMP for comparing a set of motifs to a given database (e.g. JASPAR). It can also be used to visualize motifs, motif distributions, modules and filter motifs.

Author: Eloi Mercier, Raphael Gottardo

Maintainer: Eloi Mercier <emercier at bcgsc.ca>, Raphael Gottardo <rgottard at fhcrc.org>

Citation (from within R, enter citation("MotIV")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("MotIV")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MotIV")

 

PDF R Script The MotIV users guide
PDF   Reference Manual

Details

biocViews ChIPSeq, ChIPchip, GenomicSequence, Microarray, MotifAnnotation, Software
Version 1.20.0
In Bioconductor since BioC 2.6 (R-2.11)
License GPL-2
Depends R (>= 2.10), BiocGenerics(>= 0.1.0)
Imports graphics, grid, methods, IRanges(>= 1.13.5), Biostrings(>= 1.24.0), lattice, rGADEM, stats, utils
Suggests rtracklayer
System Requirements
URL
Depends On Me motifStack
Imports Me
Suggests Me MotifDb

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source MotIV_1.20.0.tar.gz
Windows Binary MotIV_1.20.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) MotIV_1.20.0.tgz
Mac OS X 10.9 (Mavericks) MotIV_1.20.0.tgz
Browse/checkout source (username/password: readonly)
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