MetaCyto

DOI: 10.18129/B9.bioc.MetaCyto    

MetaCyto: A package for meta-analysis of cytometry data

Bioconductor version: Release (3.7)

This package provides functions for preprocessing, automated gating and meta-analysis of cytometry data. It also provides functions that facilitate the collection of cytometry data from the ImmPort database.

Author: Zicheng Hu, Chethan Jujjavarapu, Sanchita Bhattacharya, Atul J. Butte

Maintainer: Zicheng Hu <zicheng.hu at ucsf.edu>

Citation (from within R, enter citation("MetaCyto")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("MetaCyto")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MetaCyto")

 

HTML R Script Vignette Title
PDF   Reference Manual

Details

biocViews CellBasedAssays, CellBiology, Clustering, FlowCytometry, Preprocessing, Software, StatisticalMethod
Version 1.2.1
License GPL (>= 2)
Depends R (>= 3.4)
Imports flowCore(>= 1.4), tidyr (>= 0.7), fastcluster, ggplot2, metafor, cluster, FlowSOM, grDevices, graphics, stats, utils
LinkingTo
Suggests knitr, dplyr
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MetaCyto_1.2.1.tar.gz
Windows Binary MetaCyto_1.2.1.zip
Mac OS X 10.11 (El Capitan) MetaCyto_1.2.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/MetaCyto
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MetaCyto
Package Short Url http://bioconductor.org/packages/MetaCyto/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.7 Source Archive

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