To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("IPPD")

In most cases, you don't need to download the package archive at all.

IPPD

 

Isotopic peak pattern deconvolution for Protein Mass Spectrometry by template matching

Bioconductor version: Release (3.1)

The package provides functionality to extract isotopic peak patterns from raw mass spectra. This is done by fitting a large set of template basis functions to the raw spectrum using either nonnegative least squares or least absolute deviation fittting. The package offers a flexible function which tries to estimate model parameters in a way tailored to the peak shapes in the data. The package also provides functionality to process LCMS runs.

Author: Martin Slawski <ms at cs.uni-saarland.de>, Rene Hussong <rene.hussong at uni.lu>, Andreas Hildebrandt <andreas.hildebrandt at uni-mainz.de>, Matthias Hein <hein at cs.uni-saarland.de>

Maintainer: Martin Slawski <ms at cs.uni-saarland.de>

Citation (from within R, enter citation("IPPD")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("IPPD")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("IPPD")

 

PDF R Script IPPD Manual
PDF   Reference Manual

Details

biocViews Proteomics, Software
Version 1.16.0
In Bioconductor since BioC 2.8 (R-2.13) (4.5 years)
License GPL (version 2 or later)
Depends R (>= 2.12.0), MASS, Matrix, XML, digest, bitops
Imports methods, stats, graphics
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me RforProteomics
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source IPPD_1.16.0.tar.gz
Windows Binary IPPD_1.16.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) IPPD_1.16.0.tgz
Mac OS X 10.9 (Mavericks) IPPD_1.16.0.tgz
Subversion source (username/password: readonly)
GitHub source https://github.com/Bioconductor-mirror/IPPD/tree/release-3.1
Package Short Url http://bioconductor.org/packages/IPPD/
Package Downloads Report Download Stats

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