HumanTranscriptomeCompendium

DOI: 10.18129/B9.bioc.HumanTranscriptomeCompendium    

Tools to work with a Compendium of 181000 human transcriptome sequencing studies

Bioconductor version: Release (3.10)

Provide tools for working with a compendium of human transcriptome sequences (originally htxcomp).

Author: Sean Davis, Vince Carey

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

Citation (from within R, enter citation("HumanTranscriptomeCompendium")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("HumanTranscriptomeCompendium")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("HumanTranscriptomeCompendium")

 

HTML R Script HumanTranscriptomeCompendium -- a cloud-resident collection of sequenced human transcriptomes
PDF   Reference Manual

Details

biocViews Infrastructure, Software, Transcriptomics
Version 1.2.0
In Bioconductor since BioC 3.9 (R-3.6) (0.5 years)
License Artistic-2.0
Depends R (>= 3.6)
Imports shiny, ssrch, S4Vectors, SummarizedExperiment, utils
LinkingTo
Suggests knitr, BiocStyle, beeswarm, tximportData, DT, tximport, dplyr, magrittr, BiocFileCache, testthat
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package HumanTranscriptomeCompendium_1.2.0.tar.gz
Windows Binary HumanTranscriptomeCompendium_1.1.2.zip
Mac OS X 10.11 (El Capitan) HumanTranscriptomeCompendium_1.2.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/HumanTranscriptomeCompendium
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/HumanTranscriptomeCompendium
Package Short Url https://bioconductor.org/packages/HumanTranscriptomeCompendium/
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