software and data for analyses in genetics of gene expression

Bioconductor version: Release (2.14)

software and data for analyses in genetics of gene expression and/or DNA methylation

Author: VJ Carey <stvjc at>

Maintainer: VJ Carey <stvjc at>

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PDF R Script GGtools: software for eQTL identification
PDF   Reference Manual
Text   NEWS


biocViews GeneExpression, GeneticVariability, Genetics, SNP, Software
Version 5.0.0
In Bioconductor since BioC 1.9 (R-2.4)
License Artistic-2.0
Depends R (>= 2.14), GGBase(>= 3.19.7), data.table
Imports methods, utils, stats, BiocGenerics, snpStats, ff, Rsamtools, AnnotationDbi, Biobase, bit, VariantAnnotation, hexbin, rtracklayer, Gviz, stats4, IRanges, GenomicRanges, iterators, Biostrings, ROCR, biglm
Suggests GGdata, illuminaHumanv1.db, SNPlocs.Hsapiens.dbSNP.20120608, multtest
System Requirements
Depends On Me ceu1kg, cgdv17, cheung2010, encoDnaseI, ggtut
Imports Me ceuhm3
Suggests Me hmyriB36, ind1KG

Package Downloads

Package Source GGtools_5.0.0.tar.gz
Windows Binary (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) GGtools_5.0.0.tgz
Mac OS X 10.9 (Mavericks)
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