To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GGBase")

In most cases, you don't need to download the package archive at all.

GGBase

 

   

GGBase infrastructure for genetics of gene expression package GGtools

Bioconductor version: Release (3.3)

infrastructure

Author: VJ Carey <stvjc at channing.harvard.edu>

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

Citation (from within R, enter citation("GGBase")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GGBase")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GGBase")

 

PDF R Script GGBase -- infrastructure for GGtools, genetics of gene expression
PDF   Reference Manual

Details

biocViews Genetics, Infrastructure, Software
Version 3.34.0
In Bioconductor since BioC 2.2 (R-2.7) (8.5 years)
License Artistic-2.0
Depends R (>= 2.14), methods, snpStats
Imports limma, genefilter, Biobase, BiocGenerics, S4Vectors, IRanges, Matrix, AnnotationDbi, digest, GenomicRanges, SummarizedExperiment
LinkingTo
Suggests GGtools, illuminaHumanv1.db
SystemRequirements
Enhances
URL
Depends On Me ceu1kg, ceu1kgv, ceuhm3, dsQTL, encoDnaseI, GGdata, GGtools, hmyriB36, yri1kgv
Imports Me
Suggests Me ind1KG
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source GGBase_3.34.0.tar.gz
Windows Binary GGBase_3.34.0.zip
Mac OS X 10.9 (Mavericks) GGBase_3.34.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/GGBase/tree/release-3.3
Package Short Url http://bioconductor.org/packages/GGBase/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: