To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("DBChIP")

In most cases, you don't need to download the package archive at all.

DBChIP

Differential Binding of Transcription Factor with ChIP-seq

Bioconductor version: Release (2.14)

DBChIP detects differentially bound sharp binding sites across multiple conditions, with or without matching control samples.

Author: Kun Liang

Maintainer: Kun Liang <kliang at stat.wisc.edu>

Citation (from within R, enter citation("DBChIP")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("DBChIP")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("DBChIP")

 

PDF R Script DBChIP
PDF   Reference Manual

Details

biocViews ChIPSeq, Genetics, Sequencing, Software, Transcription
Version 1.8.0
In Bioconductor since BioC 2.11 (R-2.15)
License GPL (>= 2)
Depends R (>= 2.15.0), edgeR, DESeq
Imports
Suggests ShortRead, BiocGenerics
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source DBChIP_1.8.0.tar.gz
Windows Binary DBChIP_1.8.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) DBChIP_1.8.0.tgz
Mac OS X 10.9 (Mavericks) DBChIP_1.8.0.tgz
Browse/checkout source (username/password: readonly)
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