CopyNumber450k

R package for calling CNV from Illumina 450k methylation microarrays

Bioconductor version: Release (2.14)

This package contains a set of functions that allow CNV calling from Illumina 450k methylation microarrays.

Author: Simon Papillon-Cavanagh, Jean-Philippe Fortin, Nicolas De Jay

Maintainer: Simon Papillon-Cavanagh <simon.papillon-cavanagh at mail.mcgill.ca>

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("CopyNumber450k")

Citation (from within R, enter citation("CopyNumber450k")):

Documentation

PDF R Script CopyNumber450k User's Guide
PDF   Reference Manual

Details

biocViews CopyNumberVariation, DNAMethylation, Microarray, Preprocessing, QualityControl, Software
Version 1.0.0
In Bioconductor since BioC 2.14 (R-3.1)
License Artistic-2.0
Depends Biobase, minfi, DNAcopy, preprocessCore, BiocGenerics
Imports methods
Suggests CopyNumber450kData, minfiData
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Downloads

Package Source CopyNumber450k_1.0.0.tar.gz
Windows Binary CopyNumber450k_1.0.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) CopyNumber450k_1.0.0.tgz
Mac OS X 10.9 (Mavericks) CopyNumber450k_1.0.0.tgz
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