To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("Clonality")

In most cases, you don't need to download the package archive at all.

Clonality

Clonality testing

Bioconductor version: Release (3.0)

Statistical tests for clonality versus independence of tumors from the same patient based on their LOH or genomewide copy number profiles

Author: Irina Ostrovnaya

Maintainer: Irina Ostrovnaya <ostrovni at mskcc.org>

Citation (from within R, enter citation("Clonality")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("Clonality")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Clonality")

 

PDF R Script Clonality
PDF   Reference Manual

Details

biocViews Classification, CopyNumberVariation, Microarray, Software, aCGH
Version 1.14.0
In Bioconductor since BioC 2.8 (R-2.13)
License GPL-3
Depends R (>= 2.12.2), DNAcopy
Imports DNAcopy, grDevices, graphics, stats, utils
Suggests gdata, DNAcopy
SystemRequirements
URL
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source Clonality_1.14.0.tar.gz
Windows Binary Clonality_1.14.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) Clonality_1.14.0.tgz
Mac OS X 10.9 (Mavericks) Clonality_1.14.0.tgz
Browse/checkout source (username/password: readonly)
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