Clonality

Clonality testing

Bioconductor version: Release (2.14)

Statistical tests for clonality versus independence of tumors from the same patient based on their LOH or genomewide copy number profiles

Author: Irina Ostrovnaya

Maintainer: Irina Ostrovnaya <ostrovni at mskcc.org>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("Clonality")

To cite this package in a publication, start R and enter:

    citation("Clonality")

Documentation

PDF R Script Clonality
PDF   Reference Manual

Details

biocViews Classification, CopyNumberVariation, Microarray, Software, aCGH
Version 1.12.0
In Bioconductor since BioC 2.8 (R-2.13)
License GPL-3
Depends R (>= 2.12.2), DNAcopy
Imports DNAcopy, grDevices, graphics, stats, utils
Suggests gdata, DNAcopy
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Downloads

Package Source Clonality_1.12.0.tar.gz
Windows Binary Clonality_1.12.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) Clonality_1.12.0.tgz
Mac OS X 10.9 (Mavericks)
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