To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("COPDSexualDimorphism")

In most cases, you don't need to download the package archive at all.

COPDSexualDimorphism

Sexual dimorphic and COPD differential analysis for gene expression and methylation.

Bioconductor version: Release (2.14)

Sexual dimoprhic and COPD differential (SDCD) analysis contrasts regression coefficients from two stratified analysis. Stratification can be done in two ways: by COPD status or by sex. For COPD-stratified analysis, SDCD analysis contrasts sexual dimorphism between cases and controls, while sex-stratified SDCD analsysis contrasts COPD differential expression pattern between males and females. The package is meant to be used in conjunction with the package limma.

Author: J Fah Sathirapongsasuti

Maintainer: J Fah Sathirapongsasuti <fah at cs.stanford.edu>

Citation (from within R, enter citation("COPDSexualDimorphism")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("COPDSexualDimorphism")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("COPDSexualDimorphism")

 

PDF R Script SDCD eQTL
PDF R Script SDCD Genes
PDF R Script SDCD Methylation
PDF   Reference Manual
Text   NEWS

Details

biocViews AssayDomain, DNAMethylation, DifferentialExpression, GeneExpression, Microarray, Software
Version 1.0.0
In Bioconductor since BioC 2.14 (R-3.1)
License LGPL-2.1
Depends COPDSexualDimorphism.data, NCBI2R, RColorBrewer, beeswarm, limma, GenomicRanges, gplots, gtools
Imports
Suggests
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source COPDSexualDimorphism_1.0.0.tar.gz
Windows Binary COPDSexualDimorphism_1.0.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) COPDSexualDimorphism_1.0.0.tgz
Mac OS X 10.9 (Mavericks) COPDSexualDimorphism_1.0.0.tgz
Browse/checkout source (username/password: readonly)
Package Downloads Report Download Stats

Mailing Lists »

Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!

Fred Hutchinson Cancer Research Center