CHARGE

DOI: 10.18129/B9.bioc.CHARGE    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

CHARGE: CHromosome Assessment in R from Gene Expression data

Bioconductor version: Release (3.12)

Identifies genomic duplications or deletions from gene expression data.

Author: Benjamin Mayne

Maintainer: Benjamin Mayne <benjamin.mayne at sahmri.com>

Citation (from within R, enter citation("CHARGE")):

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("CHARGE")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF   Reference Manual

Details

biocViews Clustering, GeneExpression, Software
Version 1.10.0
In Bioconductor since BioC 3.7 (R-3.5) (2.5 years)
License GPL-2
Depends R (>= 3.5), GenomicRanges, methods
Imports SummarizedExperiment, FactoMineR, factoextra, IRanges, graphics, modes, parallel, plyr, cluster, diptest, stats, matrixStats
LinkingTo
Suggests roxygen2, EnsDb.Hsapiens.v86
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS 10.13 (High Sierra)
Source Repository git clone https://git.bioconductor.org/packages/CHARGE
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/CHARGE
Package Short Url https://bioconductor.org/packages/CHARGE/
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