AffyCompatible

Affymetrix GeneChip software compatibility

Bioconductor version: Release (2.14)

This package provides an interface to Affymetrix chip annotation and sample attribute files. The package allows an easy way for users to download and manage local data bases of Affynmetrix NetAffx annotation files. The package also provides access to GeneChip Operating System (GCOS) and GeneChip Command Console (AGCC)-compatible sample annotation files.

Author: Martin Morgan, Robert Gentleman

Maintainer: Martin Morgan <mtmorgan at fhcrc.org>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("AffyCompatible")

To cite this package in a publication, start R and enter:

    citation("AffyCompatible")

Documentation

PDF R Script Annotation retrieval with NetAffxResource
PDF R Script Retrieving MAGE and ARR sample attributes
PDF   Reference Manual

Details

biocViews Infrastructure, Microarray, OneChannel, Software
Version 1.24.1
In Bioconductor since BioC 2.2 (R-2.7)
License Artistic-2.0
Depends R (>= 2.7.0), XML (>= 2.8-1), RCurl (>= 0.8-1), methods
Imports Biostrings
Suggests
System Requirements
URL
Depends On Me
Imports Me IdMappingRetrieval
Suggests Me oneChannelGUI

Package Downloads

Package Source AffyCompatible_1.24.1.tar.gz
Windows Binary AffyCompatible_1.24.1.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) AffyCompatible_1.24.1.tgz
Mac OS X 10.9 (Mavericks)
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