DOI: 10.18129/B9.bioc.cheung2010    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This is the development version of cheung2010; for the stable release version, see cheung2010.

resources for genetics of gene expression based on Cheung et al 2010

Bioconductor version: Development (3.7)

Data resources related to the PLoS Biology paper Polymorphic Cis- and Trans-Regulation of Human Gene Expression, including small-footprint smlSet support for 147 hgfocus arrays and corresponding HapMap genotypes at 1.3 million SNP; 0.0.22+ includes cheung_eset... from Leek et al RECOUNT myrna output

Author: Vince Carey <stvjc at>

Maintainer: Vince Carey <stvjc at>

Citation (from within R, enter citation("cheung2010")):


To install this package, start R and enter:

## try http:// if https:// URLs are not supported


To view documentation for the version of this package installed in your system, start R and enter:



PDF R Script cheungTrans: checking trans eQTL with hgfocus arrays
PDF   Reference Manual


biocViews ExperimentData, HapMap, Homo_sapiens_Data, RNASeqData, SNPData, SequencingData
Version 0.17.3
License Artistic-2.0
Depends R (>= 2.13.0), Biobase, GGtools, GenomicRanges, hgfocus.db
Imports AnnotationDbi
Suggests SNPlocs.Hsapiens.dbSNP144.GRCh37
Enhances parallel
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package cheung2010_0.17.3.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone
Package Short Url
Package Downloads Report Download Stats

Documentation »


R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: