cheung2010

resources for genetics of gene expression based on Cheung et al 2010

Bioconductor version: Development (3.0)

Data resources related to the PLoS Biology paper Polymorphic Cis- and Trans-Regulation of Human Gene Expression, including small-footprint smlSet support for 147 hgfocus arrays and corresponding HapMap genotypes at 1.3 million SNP; 0.0.22+ includes cheung_eset... from Leek et al RECOUNT myrna output

Author: Vince Carey <stvjc at channing.harvard.edu>

Maintainer: Vince Carey <stvjc at channing.harvard.edu>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("cheung2010")

To cite this package in a publication, start R and enter:

    citation("cheung2010")

Documentation

PDF R Script cheungTrans: checking trans eQTL with hgfocus arrays
PDF   Reference Manual

Details

biocViews ExperimentData, GeneticVariability, RNAseqData
Version 0.3.0
License Artistic-2.0
Depends R (>= 2.13.0), Biobase, GGtools, GenomicRanges, hgfocus.db
Imports AnnotationDbi
Suggests SNPlocs.Hsapiens.dbSNP.20120608
System Requirements
URL
Depends On Me ggtut
Imports Me
Suggests Me

Package Downloads

Package Source cheung2010_0.3.0.tar.gz
Windows Binary cheung2010_0.3.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) cheung2010_0.3.0.tgz
Mac OS X 10.9 (Mavericks) cheung2010_0.3.0.tgz
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