FunciSNP.data

Various data sets for use with the FunciSNP package

Bioconductor version: Development (3.0)

Data sets needed for FunciSNP to integrate information from GWAS, 1000genomes and chromatin feature, in order to identify functional SNP in coding or non-coding regions.

Author: Simon G. Coetzee <simon at simoncoetzee.com> and Houtan Noushmehr, PhD <houtan at usp.br>

Maintainer: Simon G. Coetzee <scoetzee at gmail.com>

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("FunciSNP.data")

Citation (from within R, enter citation("FunciSNP.data")):

Documentation

PDF R Script FunciSNP Vignette
PDF   Reference Manual
Text   NEWS

Details

biocViews Annotation, DataImport, DataRepresentation, ExperimentData, Infrastructure, SequenceMatching
Version 1.1.0
License GPL-3
Depends R (>= 2.14.0)
Imports rtracklayer
Suggests
System Requirements
URL http://coetzeeseq.usc.edu/publication/Coetzee_SG_et_al_2012/
Depends On Me FunciSNP
Imports Me
Suggests Me

Package Downloads

Package Source FunciSNP.data_1.1.0.tar.gz
Windows Binary FunciSNP.data_1.1.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) FunciSNP.data_1.1.0.tgz
Mac OS X 10.9 (Mavericks) FunciSNP.data_1.1.0.tgz
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