ABAData

DOI: 10.18129/B9.bioc.ABAData    

This is the development version of ABAData; for the stable release version, see ABAData.

Averaged gene expression in human brain regions from Allen Brain Atlas

Bioconductor version: Development (3.8)

Provides the data for the gene expression enrichment analysis conducted in the package 'ABAEnrichment'. The package includes three datasets which are derived from the Allen Brain Atlas: (1) Gene expression data from Human Brain (adults) averaged across donors, (2) Gene expression data from the Developing Human Brain pooled into five age categories and averaged across donors and (3) a developmental effect score based on the Developing Human Brain expression data. All datasets are restricted to protein coding genes.

Author: Steffi Grote

Maintainer: Steffi Grote <steffi_grote at eva.mpg.de>

Citation (from within R, enter citation("ABAData")):

Installation

To install this package, start R and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("ABAData", version = "devel")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ABAData")

 

HTML R Script ABAData: gene expression data to use with enrichment analysis package ABAEnrichment
PDF   Reference Manual

Details

biocViews ExperimentData, ExpressionData, Homo_sapiens_Data, MicroarrayData, RNASeqData
Version 1.11.0
License GPL (>= 2)
Depends R (>= 3.2)
Imports
LinkingTo
Suggests BiocStyle, knitr, ABAEnrichment
SystemRequirements
Enhances
URL
Depends On Me
Imports Me ABAEnrichment
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ABAData_1.11.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/ABAData
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ABAData
Package Short Url http://bioconductor.org/packages/ABAData/
Package Downloads Report Download Stats

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