This package defines an AnnotationHub resource representing multiple ontologies.

library(AnnotationHub)
## Loading required package: BiocGenerics
## 
## Attaching package: 'BiocGenerics'
## The following objects are masked from 'package:stats':
## 
##     IQR, mad, sd, var, xtabs
## The following objects are masked from 'package:base':
## 
##     Filter, Find, Map, Position, Reduce, anyDuplicated, aperm, append,
##     as.data.frame, basename, cbind, colnames, dirname, do.call,
##     duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
##     lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
##     pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
##     tapply, union, unique, unsplit, which.max, which.min
## Loading required package: BiocFileCache
## Loading required package: dbplyr
ahub = AnnotationHub()
## snapshotDate(): 2022-10-18
mymeta <- query(ahub , "ontoProcData")
mymeta
## AnnotationHub with 29 records
## # snapshotDate(): 2022-10-18
## # $dataprovider: NA
## # $species: NA
## # $rdataclass: Rda
## # additional mcols(): taxonomyid, genome, description,
## #   coordinate_1_based, maintainer, rdatadateadded, preparerclass, tags,
## #   rdatapath, sourceurl, sourcetype 
## # retrieve records with, e.g., 'object[["AH97934"]]' 
## 
##              title              
##   AH97934  | caro               
##   AH97935  | cellLineOnto       
##   AH97936  | cellOnto           
##   AH97937  | cellosaurusOnto    
##   AH97938  | chebi_full         
##   ...        ...                
##   AH107277 | hcaoOnto_2022.07.19
##   AH107278 | mondo_2022.08.01   
##   AH107279 | patoOnto_2022.08.10
##   AH107280 | PROnto_67          
##   AH107281 | uberon_2022.06.30
tag = names(mymeta)[1] 
tag
## [1] "AH97934"

Session information

sessionInfo()
## R version 4.2.1 (2022-06-23)
## Platform: x86_64-pc-linux-gnu (64-bit)
## Running under: Ubuntu 20.04.5 LTS
## 
## Matrix products: default
## BLAS:   /home/biocbuild/bbs-3.16-bioc/R/lib/libRblas.so
## LAPACK: /home/biocbuild/bbs-3.16-bioc/R/lib/libRlapack.so
## 
## locale:
##  [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C              
##  [3] LC_TIME=en_GB              LC_COLLATE=C              
##  [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8   
##  [7] LC_PAPER=en_US.UTF-8       LC_NAME=C                 
##  [9] LC_ADDRESS=C               LC_TELEPHONE=C            
## [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C       
## 
## attached base packages:
## [1] stats     graphics  grDevices utils     datasets  methods   base     
## 
## other attached packages:
## [1] AnnotationHub_3.5.2 BiocFileCache_2.5.2 dbplyr_2.2.1       
## [4] BiocGenerics_0.43.4 BiocStyle_2.25.0   
## 
## loaded via a namespace (and not attached):
##  [1] Rcpp_1.0.9                    png_0.1-7                    
##  [3] Biostrings_2.65.6             assertthat_0.2.1             
##  [5] digest_0.6.30                 utf8_1.2.2                   
##  [7] mime_0.12                     R6_2.5.1                     
##  [9] GenomeInfoDb_1.33.12          stats4_4.2.1                 
## [11] RSQLite_2.2.18                evaluate_0.17                
## [13] httr_1.4.4                    pillar_1.8.1                 
## [15] zlibbioc_1.43.0               rlang_1.0.6                  
## [17] curl_4.3.3                    jquerylib_0.1.4              
## [19] blob_1.2.3                    S4Vectors_0.35.4             
## [21] rmarkdown_2.17                stringr_1.4.1                
## [23] RCurl_1.98-1.9                bit_4.0.4                    
## [25] shiny_1.7.2                   compiler_4.2.1               
## [27] httpuv_1.6.6                  xfun_0.33                    
## [29] pkgconfig_2.0.3               htmltools_0.5.3              
## [31] tidyselect_1.2.0              KEGGREST_1.37.3              
## [33] GenomeInfoDbData_1.2.9        tibble_3.1.8                 
## [35] interactiveDisplayBase_1.35.1 bookdown_0.29                
## [37] IRanges_2.31.2                fansi_1.0.3                  
## [39] withr_2.5.0                   crayon_1.5.2                 
## [41] dplyr_1.0.10                  later_1.3.0                  
## [43] bitops_1.0-7                  rappdirs_0.3.3               
## [45] jsonlite_1.8.2                xtable_1.8-4                 
## [47] lifecycle_1.0.3               DBI_1.1.3                    
## [49] magrittr_2.0.3                cli_3.4.1                    
## [51] stringi_1.7.8                 cachem_1.0.6                 
## [53] XVector_0.37.1                promises_1.2.0.1             
## [55] bslib_0.4.0                   ellipsis_0.3.2               
## [57] filelock_1.0.2                generics_0.1.3               
## [59] vctrs_0.4.2                   tools_4.2.1                  
## [61] bit64_4.0.5                   Biobase_2.57.1               
## [63] glue_1.6.2                    purrr_0.3.5                  
## [65] BiocVersion_3.16.0            fastmap_1.1.0                
## [67] yaml_2.3.6                    AnnotationDbi_1.59.1         
## [69] BiocManager_1.30.18           memoise_2.0.1                
## [71] knitr_1.40                    sass_0.4.2