targetscan.Mm.eg.db

TargetScan miRNA target predictions for mouse

Bioconductor version: Development (3.0)

TargetScan miRNA target predictions for mouse assembled using data from the TargetScan website. TargetScan predicts biological targets of miRNAs by searching for the presence of conserved 8mer and 7mer sites that match the seed region of each miRNA. Also identified are sites with mismatches in the seed region that are compensated by conserved 3' pairing. In mammals, predictions are ranked based on the predicted efficacy of targeting as calculated using the context scores of the sites.

Author: Gabor Csardi <Gabor.Csardi at unil.ch>

Maintainer: James F. Reid <james.reid at ifom-ieo-campus.it>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("targetscan.Mm.eg.db")

To cite this package in a publication, start R and enter:

    citation("targetscan.Mm.eg.db")

Documentation

PDF   Reference Manual
Text   LICENSE

Details

biocViews AnnotationData, FunctionalAnnotation
Version 0.6.1
License file LICENSE
Depends R (>= 2.7.0), methods, AnnotationDbi(>= 1.18.3)
Imports methods, AnnotationDbi
Suggests
System Requirements
URL
Depends On Me
Imports Me
Suggests Me MmPalateMiRNA

Package Downloads

Package Source targetscan.Mm.eg.db_0.6.1.tar.gz
Windows Binary targetscan.Mm.eg.db_0.6.1.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) targetscan.Mm.eg.db_0.6.1.tgz
Mac OS X 10.9 (Mavericks) targetscan.Mm.eg.db_0.6.1.tgz
Package Downloads Report Download Stats

Mailing Lists »

Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!

Fred Hutchinson Cancer Research Center