To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("SNPlocs.Hsapiens.dbSNP.20090506")

In most cases, you don't need to download the package archive at all.

SNPlocs.Hsapiens.dbSNP.20090506

This is the development version of SNPlocs.Hsapiens.dbSNP.20090506; for the stable release version, see SNPlocs.Hsapiens.dbSNP.20090506.

SNP locations for Homo sapiens (dbSNP Build 130)

Bioconductor version: Development (3.0)

SNP locations and alleles for Homo sapiens extracted from NCBI dbSNP Build 130. The source data files used for this package were created by NCBI on 5-6 May, 2009, and contain SNPs mapped to reference genome NCBI Build 36.1, which is identical to the hg18 genome from UCSC. Therefore, the SNPs in this package can be "injected" in BSgenome.Hsapiens.UCSC.hg18 and they will land at the correct location.

Author: Herve Pages

Maintainer: H. Pages <hpages at fhcrc.org>

To install this package, start R and enter:

Citation (from within R, enter citation("SNPlocs.Hsapiens.dbSNP.20090506")):

Installation

source("http://bioconductor.org/biocLite.R")
biocLite("SNPlocs.Hsapiens.dbSNP.20090506")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SNPlocs.Hsapiens.dbSNP.20090506")

 

PDF   Reference Manual

Details

biocViews AnnotationData, Genetics, Homo_sapiens
Version 0.99.8
License Artistic-2.0
Depends R (>= 2.10), IRanges, GenomicRanges, BSgenome(>= 1.25.6)
Imports methods, utils, IRanges, GenomicRanges, BSgenome
Suggests Biostrings, BSgenome.Hsapiens.UCSC.hg18(>= 1.3.19)
System Requirements
URL
Depends On Me
Imports Me
Suggests Me ind1KG

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source SNPlocs.Hsapiens.dbSNP.20090506_0.99.8.tar.gz
Windows Binary SNPlocs.Hsapiens.dbSNP.20090506_0.99.8.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) SNPlocs.Hsapiens.dbSNP.20090506_0.99.8.tgz
Mac OS X 10.9 (Mavericks) SNPlocs.Hsapiens.dbSNP.20090506_0.99.8.tgz
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