## ----setup, include = FALSE--------------------------------------------------- library(NuPoP) knitr::opts_chunk$set( collapse = TRUE, comment = "#>" ) ## ----------------------------------------------------------------------------- library(NuPoP) ## ----eval=FALSE--------------------------------------------------------------- # predNuPoP(system.file("extdata", "test.seq", package="NuPoP"),species=7,model=4) ## ----eval=FALSE--------------------------------------------------------------- # predNuPoP(file="/Users/jon/DNA/test.seq",species=7,model=4) ## ----eval=FALSE--------------------------------------------------------------- # predNuPoP_chem(file="/Users/jon/DNA/test.seq",species=7,model=4) ## ----eval=TRUE---------------------------------------------------------------- results=readNuPoP(system.file("extdata", "test.seq_Prediction4.txt", package="NuPoP"),startPos=1,endPos=5000) results[1:5,] ## ----------------------------------------------------------------------------- #par(mar=c(2,2,2,2)) plotNuPoP(results) ## ----sessionInfo-------------------------------------------------------------- sessionInfo()