Changes in version 1.1.6 - Accepts DelayedArray, HDF5Array and dgCMatrix inputs in the slots of input SCE objects. - Significant speed optimisation on scSEGIndex and add BiocParallel support. - Updated scSEGIndex references after publication. - scMerge now has the svd_k input that controls the number eigenvectors needed in the RUV step to allow fast approximation for large dataset. - Now using BiocSingular to manage all SVD components. - Now automatically remove zeroes in the rows and columns of the SCE. Changes in version 1.1.5 - Adding version restrictions on S4Vectors and SingleCellExperiment dependent packages. Changes in version 1.1.4 - plot_igraph would allow suppression of igraph output during unsupervised scMerge Changes in version 1.1.3 - Column name must be non-NULL and without duplicates Changes in version 1.1.2 - Resolved problems with only a single linking cell-type across multiple batches Changes in version 1.1.0 - Accepted by Bioconductor Changes in version 0.99 scMerge 0.99.24 - Updated ciation information due to PNAS acceptance. scMerge 0.99.23 - Fixed assignment based on feedbacks scMerge 0.99.21 - Increase code coverage to 85%. scMerge 0.99.20 - Updated vignette on SEGs and manuals scMerge 0.99.19 - Fixed spelling - Added verbose option - Code coverage at 75 percent (more tests on error handling needed) scMerge 0.99.17 - Fixed README install_github vignette issue. - Fixed pkgdown organisation issue. - Major updates on the scReplicate function: more informative messages. - Using cross-product of matrix to perform SVD to speed up calculations. - Added testing scripts. - Fixed vignette text output issues. scMerge 0.99.11 - Reduced data size in scMerge to pass BioC checks