Changes in version 1.22.0 Breaking changes - Adds experiment parameter to different glm* functions. - Changing in hashing function to use rlang::hash that reduces a dependency. - Deprecates hallmarks function as API has been shutdown. Miscellaneous - Use of native pipe instead of {magritrr}'s %>% - Corrects styling and linter issues for better code quality and readability - Starts to deprecates parameters using dot.case in favor of camelCase. - Increases code coverage to 95%. Changes in version 1.14.3 - Corrects bug when calculating the penalty.factor from a matrix (as it was not applying the transformation function) Changes in version 1.14.2 - Corrects all CRAN deprecations (includes code from {loose.rock} in this package) Changes in version 1.11.0 - {sparsebn} has been disabled pending upstream corrections (examples from that package failed to pass) Changes in version 1.2.0 - Depends on more recent version of {loose.rock} (previous was deprecated) - Release of new Bioconductor 3.9 Changes in version 1.1.0 - Official release of glmSparseNet in Bioconductor Changes in version 0.99.17 - Converts to 4 space indentation Changes in version 0.99.15 - Speeds up ppi vignette Changes in version 0.99.14 - Renamed functions to camelCase - Renamed non-exported functions with '.' prefix - Removed most methods, as suggested by Bioc reviewer - Removed commented code - Changed functions that handle tcga data to use TCGAutils package - Many more described in https://github.com/Bioconductor/Contributions/issues/849#issuecomment-422594871 Changes in version 0.99.13 - Renamed draw.kaplan to separate2groups.cox Changes in version 0.99.9 - Removed loose.rock functions from this package as they are published in CRAN