Changes in version 1.5.14 - Added p_mu0 to output of fitAssayDiff() - Added respectLevels and filtering to plotProfileHeatmap() Changes in version 1.5.13 - Added handling of unquoted column names to most plotting functions - Added passing of specific columns to dualFilter - Added drop to addDiffStatus Changes in version 1.5.12 - Added plotGrlCol() Changes in version 1.5.11 - Added defineSeqinfo() Changes in version 1.5.10 - Added bed format to importPeaks() Changes in version 1.5.8 - Added control of side-axis label position for plotProfileHeatmap() - Added option to return merged key-value ranges for mergeByHMP() Changes in version 1.5.7 - Matched DiffBind and csaw settings for fitAssayDiff() - Added min_win to all merging functions - Added n_max to getProfileData() Changes in version 1.5.6 - Added mapGrlCols() Changes in version 1.5.5 - Added plotPairwise() and addDiffStatus() Changes in version 1.4.2 - Added Fixed-width vignette & edited sliding window - Added se and peaks as example data for man pages and vignettes - Included defineRegions() - Enabled plotHFCG() without Ideogram tracks - Enabled use of offsets for normalisation in fitAssayDiff() Changes in version 1.3.9 - Changed labelling strategy for plotPie() Changes in version 1.3.8 - Added using coverage to makeConsensus() Changes in version 1.3.7 - Added plotAssayHeatmap() - Added fitAssayDiff() and added coercion of TopTags objects Changes in version 1.3.6 - Expanded arguments for plotSpliDonut() - Added mergeByHMP() for merging overlapping windows using the harmonic mean p Changes in version 1.3.5 - Added plotSplitDonut() - Bugfix in plotAssayDensities() and plotAssayRle() along with enabling plotting by group Changes in version 1.3.4 - Added mergeBySig() Changes in version 1.1.5 (2022-10-11) - Added makeConsensus() and updated vignette Changes in version 1.1.3 (2022-08-01) - Added plotOverlaps() for generation of Venn Diagrams and ComplexUpset plots Changes in version 1.1.2 (2022-07-22) - Added collapseTranscripts = "auto" as the default for plotHFGC() - getProfileData() now returns log2 transformed data by default - getProfileData() now uses bplapply() internally - Bugfixes for plotPie(), distinctMC() colToRanges() and stitchRanges() Changes in version 1.1.1 (2022-06-01) - Bugfix so as_tibble() respects original column names Changes in version 0.99.0 (2022-03-28) - Submitted to Bioconductor