Changes in version 1.9.1 - Bug fixes Changes in version 1.5.2 - Bug fix in plotQC - Minor improvements in documentations of functions - Included motif list for other species in KinaseSubstrateScore function - Added plotting parameters in kinaseSubstrateHeatmap function Changes in version 1.5.1 - Development version Changes in version 1.4.1 - Bug fix in PCA plot variance Changes in version 1.4.0 - BioC release 3.14 Changes in version 1.3.1 - Bug fixes in the vignette Changes in version 1.3.0 - Bioconductor development version Changes in version 1.2.1 - Included Cell Report citation - rainbow colour palette is used for plotQC function Changes in version 1.2.0 - Bioconductor release version Changes in version 1.1.9 - Fixes in documentation, examples and styles to meet BioC requirements Changes in version 1.1.8 - Fixes in documentation and examples to meet BioC requirements Changes in version 1.1.7 - Fixed getSPS to expect residue information. Changes in version 1.1.6 - Included warning signs to creating PhosphoExperiment object without attributes. Changes in version 1.1.5 - Fixed the warning message generated in plotQC for dendrograms. (Warning message: Vectorized input to element_text() is not officially supported.). Changes in version 1.1.4 - Fixed the parameter of plotQC from cols to grps Changes in version 1.1.3 - Fixed a bug in ptImpute function - Edited medianScaling documentation to be more specific Changes in version 0.1.5 - Significant updates and addition to the documentation - Major changes to code writing style to comply with BioC - Updated TC example data