CHANGES IN VERSION 1.8.1 ------------------------- o Bugfix in merging splicing counts (#41) CHANGES IN VERSION 1.6.1 ------------------------- o Fixing quantile filtering defaults (#28) o Require min expression in 5% instead of 95% of the samples o Require min expression on both sides of the junction o Align FRASER package with DROP pipeline (#24) o Move temp directory from tempdir() to working directory getwd() (#35) o Improve visualizations and Improve documentation o Improve internal object validation o Minor bugfixes (eg. #37) CHANGES IN VERSION 1.2.1 o Add merging of external counts o Add publication o Minor bugfixes CHANGES IN VERSION 1.1.6 ------------------------- o Use proper S3/S4 methods to share functions between packages o Minor API changes due to S3/S4 changes (e.g fds -> object) o Switch from psiSite to theta o Improved documentation o Minor bugfixes CHANGES IN VERSION 1.1.3 ------------------------- o Update and adjust injectOutlier and hyperParameter functions o Option to compute z scores in logit space or not o Add cap value [0.01,0.99] to logit function o Use pairedEnd counting with Rsubread o Correct assayName pajd -> padj o Minor bugfixes CHANGES IN VERSION 1.1.2 ------------------------- o Option to consider only the standard chromosomes in the counting o Option to include additional columns from mcols(fds) in the result table o Annotation of junctions with corresponding gene names/ids now produces an additional column in mcols(fds) that contains further gene names/ids if the junction overlaps with multiple genes o Minor bugfixes CHANGES IN VERSION 1.1.1 ------------------------- o Bugfix correcting the strand specific counting for paired-end reads CHANGES IN VERSION 0.99.1 ------------------------- o Introduction of the shinyApp CHANGES IN VERSION 0.99.0 ------------------------- o This is the initial setup of the FRASER package. o Use SummarizedExperiment as superclass o Integrate package into the Bioconductor infrastructure