yaqcaffy

Affymetrix expression data quality control and reproducibility analysis

Bioconductor version: Development (3.0)

Quality control of Affymetrix GeneChip expression data and reproducibility analysis of human whole genome chips with the MAQC reference datasets.

Author: Laurent Gatto

Maintainer: Laurent Gatto <laurent.gatto at gmail.com>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("yaqcaffy")

To cite this package in a publication, start R and enter:

    citation("yaqcaffy")

Documentation

PDF R Script yaqcaffy: Affymetrix quality control and MAQC reproducibility
PDF   Reference Manual
Text   NEWS

Details

biocViews Microarray, OneChannel, QualityControl, ReportWriting, Software
Version 1.25.0
In Bioconductor since BioC 2.2 (R-2.7)
License Artistic-2.0
Depends simpleaffy(>= 2.19.3), methods
Imports stats4
Suggests MAQCsubsetAFX, affydata, xtable, tcltk2, tcltk
System Requirements
URL
Depends On Me
Imports Me
Suggests Me qcmetrics

Package Downloads

Package Source yaqcaffy_1.25.0.tar.gz
Windows Binary yaqcaffy_1.25.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) yaqcaffy_1.25.0.tgz
Mac OS X 10.9 (Mavericks)
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