waveTiling

Wavelet-Based Models for Tiling Array Transcriptome Analysis

Bioconductor version: Development (3.0)

This package is designed to conduct transcriptome analysis for tiling arrays based on fast wavelet-based functional models.

Author: Kristof De Beuf <kristof.debeuf at UGent.be>, Peter Pipelers <peter.pipelers at ugent.be> and Lieven Clement <lieven.clement at gmail.com>

Maintainer: Kristof De Beuf <kristof.debeuf at UGent.be>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("waveTiling")

To cite this package in a publication, start R and enter:

    citation("waveTiling")

Documentation

PDF R Script The waveTiling package
PDF   Reference Manual
Text   NEWS

Details

biocViews DifferentialExpression, GeneExpression, Microarray, Software, TimeCourse
Version 1.7.0
In Bioconductor since BioC 2.11 (R-2.15)
License GPL (>=2)
Depends oligo, oligoClasses, Biobase, Biostrings, GenomeGraphs
Imports methods, affy, preprocessCore, GenomicRanges, waveslim, IRanges
Suggests BSgenome, BSgenome.Athaliana.TAIR.TAIR9, waveTilingData, pd.atdschip.tiling, TxDb.Athaliana.BioMart.plantsmart12
System Requirements
URL https://r-forge.r-project.org/projects/wavetiling/
Depends On Me
Imports Me
Suggests Me

Package Downloads

Package Source waveTiling_1.7.0.tar.gz
Windows Binary waveTiling_1.7.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) waveTiling_1.7.0.tgz
Mac OS X 10.9 (Mavericks)
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