virtualArray

Build virtual array from different microarray platforms

Bioconductor version: Development (3.0)

This package permits the user to combine raw data of different microarray platforms into one virtual array. It consists of several functions that act subsequently in a semi-automatic way. Doing as much of the data combination and letting the user concentrate on analysing the resulting virtual array.

Author: Andreas Heider

Maintainer: Andreas Heider <aheider at trm.uni-leipzig.de>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("virtualArray")

To cite this package in a publication, start R and enter:

    citation("virtualArray")

Documentation

PDF R Script virtualArray Vignette
PDF   Reference Manual

Details

biocViews DataImport, Microarray, MultipleComparison, OneChannel, Preprocessing, Software
Version 1.9.0
In Bioconductor since BioC 2.10 (R-2.15)
License GPL-3
Depends R (>= 2.15.0), BiocGenerics, methods, plyr, preprocessCore
Imports affy, affyPLM, AnnotationDbi, Biobase, gcrma, GEOquery, graphics, methods, reshape2, stats, utils, tseries, outliers
Suggests affydata, plier, limma, lumi, org.Hs.eg.db
System Requirements
URL
Depends On Me
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Package Downloads

Package Source virtualArray_1.9.0.tar.gz
Windows Binary virtualArray_1.9.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) virtualArray_1.9.0.tgz
Mac OS X 10.9 (Mavericks)
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