spade

SPADE -- An analysis and visualization tool for Flow Cytometry

Bioconductor version: Development (3.0)

SPADE, or Spanning tree Progression of Density normalized Events, is an analysis and visualization tool for high dimensional flow cytometry data that organizes cells into hierarchies of related phenotypes.

Author: M. Linderman, P. Qiu, E. Simonds, Z. Bjornson

Maintainer: Michael Linderman <michael.d.linderman at gmail.com>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("spade")

To cite this package in a publication, start R and enter:

    citation("spade")

Documentation

PDF R Script spade package
PDF   Reference Manual
Text   LICENSE

Details

biocViews Clustering, FlowCytometry, GUI, GraphAndNetwork, Software, Visualization
Version 1.13.0
In Bioconductor since BioC 2.10 (R-2.15)
License GPL-2
Depends R (>= 2.11), igraph, Rclusterpp
Imports Biobase, flowCore
Suggests flowViz
System Requirements
URL http://cytospade.org
Depends On Me
Imports Me
Suggests Me

Package Downloads

Package Source spade_1.13.0.tar.gz
Windows Binary spade_1.13.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) spade_1.13.0.tgz
Mac OS X 10.9 (Mavericks)
Package Downloads Report Download Stats

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