similaRpeak
This is the development version of similaRpeak; for the stable release version, see similaRpeak.
All Bioconductor versions of similaRpeak
3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1
Metrics to estimate a level of similarity between two ChIP-Seq profiles
Bioconductor version: 3.24 · Package version: 1.45.0
This package calculates metrics which quantify the level of similarity between ChIP-Seq profiles. More specifically, the package implements six pseudometrics specialized in pattern similarity detection in ChIP-Seq profiles.
Author: Astrid Deschênes [cre, aut], Elsa Bernatchez [aut], Charles Joly Beauparlant [aut], Fabien Claude Lamaze [aut], Rawane Samb [aut], Pascal Belleau [aut], Arnaud Droit [aut]
Maintainer: Astrid Deschênes <adeschen at hotmail.com>
Citation
From within R, enter citation("similaRpeak"):
Astrid Deschênes, Elsa Bernatchez, Charles Joly Beauparlant, Fabien Claude Lamaze, Rawane Samb, Pascal Belleau, Arnaud Droit. similaRpeak: Metrics to estimate a level of similarity between two ChIP-Seq profiles. doi:10.18129/B9.bioc.similaRpeak, R package version 1.45.0, https://bioconductor.org/packages/similaRpeak.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("similaRpeak")For older versions of R, please refer to the appropriate Bioconductor release.
Details
| Version | 1.45.0 |
| License | Artistic-2.0 |
| URL | https://github.com/adeschen/similaRpeak |
| Bug Reports | https://github.com/adeschen/similaRpeak/issues |
| Last updated | 2026-04-28 |
| In Bioconductor since | BioC 3.1 (R-3.2) (11 years) |
| Downloads rank | 920 of 2,456 |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | BiologicalQuestion, ChIPSeq, DifferentialExpression, Genetics, MultipleComparison, Software |
| Package Short Url | https://bioconductor.org/packages/similaRpeak/ |
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("similaRpeak")| Similarity between two ChIP-Seq profiles | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Download
Follow the installation instructions to use this package in your R session.
| Source package | similaRpeak_1.45.0.tar.gz |
| Windows binary (x86_64) | similaRpeak_1.45.0.zip |
| macOS binary (arm64) | similaRpeak_1.45.0.tgz |
| macOS binary (x86_64) | similaRpeak_1.45.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/similaRpeak |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/similaRpeak |
| Package Downloads Report | Download Stats |
Dependencies
Depends: R6 (>= 2.0)
Imports: stats
Suggests: RUnit, BiocGenerics, knitr, Rsamtools, GenomicAlignments, rtracklayer, rmarkdown, BiocStyle