Pathway Analysis

Bioconductor version: Development (3.0)

Conducts pathway analysis by calculating the NT_k and NE_k statistics as described in Tian et al. (2005)

Author: Weil Lai (optimized R and C code), Lu Tian and Peter Park (algorithm development and initial R code)

Maintainer: Weil Lai <wlai at>

To install this package, start R and enter:


Citation (from within R, enter citation("sigPathway")):


PDF R Script sigPathway
PDF   Reference Manual


biocViews DifferentialExpression, MultipleComparison, Software
Version 1.33.0
In Bioconductor since BioC 1.9 (R-2.4)
License GPL-2
Depends R (>= 2.10)
Suggests hgu133a.db(>= 1.10.0), XML (>= 1.6-3), AnnotationDbi(>= 1.3.12)
System Requirements
Depends On Me tRanslatome
Imports Me
Suggests Me

Package Downloads

Package Source sigPathway_1.33.0.tar.gz
Windows Binary (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) sigPathway_1.33.0.tgz
Mac OS X 10.9 (Mavericks) sigPathway_1.33.0.tgz
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