To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("seqCNA")

In most cases, you don't need to download the package archive at all.

seqCNA

This is the development version of seqCNA; for the stable release version, see seqCNA.

Copy number analysis of high-throughput sequencing cancer data

Bioconductor version: Development (3.0)

Copy number analysis of high-throughput sequencing cancer data with fast summarization, extensive filtering and improved normalization

Author: David Mosen-Ansorena

Maintainer: David Mosen-Ansorena <dmosen.gn at cicbiogune.es>

To install this package, start R and enter:

Citation (from within R, enter citation("seqCNA")):

Installation

source("http://bioconductor.org/biocLite.R")
biocLite("seqCNA")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("seqCNA")

 

PDF R Script seqCNA
PDF   Reference Manual

Details

biocViews CopyNumberVariation, Genetics, Sequencing, Software
Version 1.7.0
In Bioconductor since BioC 2.13 (R-3.0)
License GPL-3
Depends R (>= 3.0), GLAD(>= 2.14), doSNOW (>= 1.0.5), adehabitatLT (>= 0.3.4), seqCNA.annot(>= 0.99), methods
Imports
Suggests
System Requirements samtools
URL
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source seqCNA_1.7.0.tar.gz
Windows Binary seqCNA_1.7.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) seqCNA_1.7.0.tgz
Mac OS X 10.9 (Mavericks) seqCNA_1.7.0.tgz
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