DOI: 10.18129/B9.bioc.sRAP    

This is the development version of sRAP; for the stable release version, see sRAP.

Simplified RNA-Seq Analysis Pipeline

Bioconductor version: Development (3.9)

This package provides a pipeline for gene expression analysis (primarily for RNA-Seq data). The normalization function is specific for RNA-Seq analysis, but all other functions (Quality Control Figures, Differential Expression and Visualization, and Functional Enrichment via BD-Func) will work with any type of gene expression data.

Author: Charles Warden

Maintainer: Charles Warden <cwarden45 at>

Citation (from within R, enter citation("sRAP")):


To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
BiocManager::install("sRAP", version = "3.9")

For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



PDF R Script sRAP Vignette
PDF   Reference Manual


biocViews DifferentialExpression, GO, GeneExpression, GeneSetEnrichment, Microarray, Preprocessing, QualityControl, RNAseq, Software, Statistics, Visualization
Version 1.23.0
In Bioconductor since BioC 2.13 (R-3.0) (5.5 years)
License GPL-3
Depends WriteXLS
Imports gplots, pls, ROCR, qvalue
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package sRAP_1.23.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan) sRAP_1.23.0.tgz
Source Repository git clone
Source Repository (Developer Access) git clone
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