rnaSeqMap

rnaSeq secondary analyses

Bioconductor version: Development (3.0)

The rnaSeqMap library provides classes and functions to analyze the RNA-sequencing data using the coverage profiles in multiple samples at a time

Author: Anna Lesniewska <alesniewska at cs.put.poznan.pl>; Michal Okoniewski <michal at fgcz.ethz.ch>

Maintainer: Michal Okoniewski <michal at fgcz.ethz.ch>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("rnaSeqMap")

To cite this package in a publication, start R and enter:

    citation("rnaSeqMap")

Documentation

PDF R Script rnaSeqMap primer
PDF   Reference Manual

Details

biocViews Annotation, DifferentialExpression, GeneExpression, RNASeq, ReportWriting, SAGE, Sequencing, Software, Transcription, Visualization
Version 2.21.0
In Bioconductor since BioC 2.7 (R-2.12)
License GPL-2
Depends R (>= 2.11.0), methods, Biobase, Rsamtools, GenomicAlignments
Imports GenomicRanges, IRanges, edgeR, DESeq, DBI
Suggests
System Requirements
URL
Depends On Me ampliQueso
Imports Me
Suggests Me

Package Downloads

Package Source rnaSeqMap_2.21.0.tar.gz
Windows Binary rnaSeqMap_2.21.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) rnaSeqMap_2.21.0.tgz
Mac OS X 10.9 (Mavericks)
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