rama

Robust Analysis of MicroArrays

Bioconductor version: Development (3.0)

Robust estimation of cDNA microarray intensities with replicates. The package uses a Bayesian hierarchical model for the robust estimation. Outliers are modeled explicitly using a t-distribution, and the model also addresses classical issues such as design effects, normalization, transformation, and nonconstant variance.

Author: Raphael Gottardo

Maintainer: Raphael Gottardo <raph at stat.ubc.ca>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("rama")

To cite this package in a publication, start R and enter:

    citation("rama")

Documentation

PDF R Script rama Tutorial
PDF   Reference Manual

Details

biocViews Microarray, Preprocessing, QualityControl, Software, TwoChannel
Version 1.39.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier
License GPL (>= 2)
Depends R (>= 2.5.0)
Imports
Suggests
System Requirements
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Package Downloads

Package Source rama_1.39.0.tar.gz
Windows Binary rama_1.39.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) rama_1.39.0.tgz
Mac OS X 10.9 (Mavericks)
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