plethy

R framework for exploration and analysis of respirometry data

Bioconductor version: Development (3.0)

This package provides the infrastructure and tools to import, query and perform basic analysis of whole body plethysmography and metabolism data. Currently support is limited to data derived from Buxco respirometry instruments as exported by their FinePointe software.

Author: Daniel Bottomly, Marty Ferris

Maintainer: Daniel Bottomly <bottomly at ohsu.edu>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("plethy")

To cite this package in a publication, start R and enter:

    citation("plethy")

Documentation

PDF R Script plethy
PDF   Reference Manual
Text   NEWS

Details

biocViews DataImport, DataRepresentation, Infastructure, Software, TimeCourse, biocViews
Version 1.3.0
In Bioconductor since BioC 2.13 (R-3.0)
License GPL-3
Depends R (>= 3.1.0), methods
Imports Streamer, DBI, RSQLite, IRanges, reshape2, plyr, batch, RColorBrewer
Suggests RUnit, BiocGenerics, BiocStyle
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Downloads

Package Source plethy_1.3.0.tar.gz
Windows Binary plethy_1.3.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) plethy_1.3.0.tgz
Mac OS X 10.9 (Mavericks)
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