pRolocGUI

This is the development version of pRolocGUI; for the stable release version, see pRolocGUI.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0

Interactive visualisation of spatial proteomics data

Bioconductor version: Development (3.24)

The package pRolocGUI comprises functions to interactively visualise spatial proteomics data on the basis of pRoloc, pRolocdata and shiny.

Author: Lisa Breckels [aut, cre] ORCID: 0000-0001-8918-7171 , Thomas Naake [aut], Laurent Gatto [aut] ORCID: 0000-0002-1520-2268

Maintainer: Lisa Breckels <lms79 at cam.ac.uk>

Citation (from within R, enter citation("pRolocGUI")):

Lisa Breckels, Thomas Naake, Laurent Gatto. pRolocGUI: Interactive visualisation of spatial proteomics data. doi:10.18129/B9.bioc.pRolocGUI, R package version 2.23.0, https://bioconductor.org/packages/pRolocGUI.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("pRolocGUI")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("pRolocGUI")

pRolocGUI - Interactive visualisation of spatial proteomics data	HTML	R Script
Reference Manual	PDF
Video	Video

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	GUI, Proteomics, Software, Visualization
Version	2.23.0
In Bioconductor since	BioC 3.0 (R-3.1) (12 years)
License	GPL-2
Depends	methods, R (>= 3.1.0), pRoloc (>= 1.27.6), Biobase, MSnbase (>= 2.1.11)
Imports	shiny (>= 0.9.1), scales, dplyr, DT (>= 0.1.40), graphics, utils, ggplot2, shinydashboardPlus (>= 2.0.0), colourpicker, shinyhelper, shinyWidgets, shinyjs, colorspace, stats, grDevices, grid, BiocGenerics, shinydashboard
System Requirements
URL	https://github.com/lgatto/pRolocGUI
Bug Reports	https://github.com/lgatto/pRolocGUI/issues

Suggests	pRolocdata, knitr, BiocStyle (>= 2.5.19), rmarkdown, testthat (>= 3.0.0)
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	pRolocGUI_2.23.0.tar.gz
Windows Binary (x86_64)	pRolocGUI_2.23.0.zip
macOS Binary (big-sur-x86_64)	pRolocGUI_2.23.0.tgz
macOS Binary (sonoma-arm64)	pRolocGUI_2.23.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/pRolocGUI
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/pRolocGUI
Package Short Url	https://bioconductor.org/packages/pRolocGUI/
Package Downloads Report	Download Stats