To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("netbenchmark")

In most cases, you don't need to download the package archive at all.

netbenchmark

 

   

This is the development version of netbenchmark; for the stable release version, see netbenchmark.

Benchmarking of several gene network inference methods

Bioconductor version: Development (3.6)

This package implements a benchmarking of several gene network inference algorithms from gene expression data.

Author: Pau Bellot, Catharina Olsen, Patrick Meyer, with contributions from Alexandre Irrthum

Maintainer: Pau Bellot <pau.bellot at upc.edu>

Citation (from within R, enter citation("netbenchmark")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("netbenchmark")

Documentation

HTML R Script Netbenchmark
PDF   Reference Manual
Text   NEWS

Details

biocViews GeneExpression, GraphAndNetwork, Microarray, Network, NetworkInference, Software
Version 1.9.0
In Bioconductor since BioC 3.1 (R-3.2) (2 years)
License CC BY-NC-SA 4.0
Depends grndata(>= 0.99.3)
Imports Rcpp (>= 0.11.0), minet, randomForest, c3net, PCIT, GeneNet, tools, pracma, Matrix, corpcor, fdrtool
LinkingTo Rcpp
Suggests RUnit, BiocGenerics, knitr, graph
SystemRequirements
Enhances
URL https://imatge.upc.edu/netbenchmark/
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source netbenchmark_1.9.0.tar.gz
Windows Binary netbenchmark_1.9.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) netbenchmark_1.9.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/netbenchmark
Package Short Url http://bioconductor.org/packages/netbenchmark/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: