netReg

DOI: 10.18129/B9.bioc.netReg    

This is the development version of netReg; for the stable release version, see netReg.

Network-Regularized Regression Models

Bioconductor version: Development (3.8)

netReg fits linear regression models using network-penalization. Graph prior knowledge, in the form of biological networks, is being incorporated into the loss function of the linear model. The networks describe biological relationships such as co-regulation or dependency of the same transcription factors/metabolites/etc. yielding a part sparse and part smooth solution for coefficient profiles.

Author: Simon Dirmeier [aut, cre]

Maintainer: Simon Dirmeier <simon.dirmeier at web.de>

Citation (from within R, enter citation("netReg")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("netReg")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("netReg")

 

HTML R Script netReg
PDF   Reference Manual
Text   NEWS
Text   LICENSE

Details

biocViews FeatureExtraction, GraphAndNetwork, Network, Regression, Software, StatisticalMethod
Version 1.5.0
In Bioconductor since BioC 3.5 (R-3.4) (1 year)
License GPL-3 | BSL-1.0 + file LICENSE
Depends R (>= 3.4)
Imports Rcpp, stats
LinkingTo Rcpp, RcppArmadillo
Suggests testthat, knitr, rmarkdown, BiocStyle, lintr, lassoshooting
SystemRequirements C++11
Enhances
URL https://github.com/dirmeier/netReg
BugReports https://github.com/dirmeier/netReg/issues
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package netReg_1.5.0.tar.gz
Windows Binary netReg_1.5.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) netReg_1.5.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/netReg
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/netReg
Package Short Url http://bioconductor.org/packages/netReg/
Package Downloads Report Download Stats

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