To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("multiOmicsViz")

In most cases, you don't need to download the package archive at all.

multiOmicsViz

DOI: 10.18129/B9.bioc.multiOmicsViz    

This is the development version of multiOmicsViz; for the stable release version, see multiOmicsViz.

Plot the effect of one omics data on other omics data along the chromosome

Bioconductor version: Development (3.6)

Calculate the spearman correlation between the source omics data and other target omics data, identify the significant correlations and plot the significant correlations on the heat map in which the x-axis and y-axis are ordered by the chromosomal location.

Author: Jing Wang <jingwang.uestc at gmail.com>

Maintainer: Jing Wang <jingwang.uestc at gmail.com>

Citation (from within R, enter citation("multiOmicsViz")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("multiOmicsViz")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("multiOmicsViz")

 

PDF R Script multiOmicsViz
PDF   Reference Manual
Text   NEWS

Details

biocViews Software, SystemsBiology, Visualization
Version 1.1.0
In Bioconductor since BioC 3.5 (R-3.4) (< 6 months)
License LGPL
Depends R (>= 3.3.2)
Imports methods, parallel, doParallel, foreach, grDevices, graphics, utils, SummarizedExperiment, stats
LinkingTo
Suggests BiocGenerics
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package multiOmicsViz_1.1.0.tar.gz
Windows Binary multiOmicsViz_1.1.0.zip
Mac OS X 10.11 (El Capitan) multiOmicsViz_1.1.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/multiOmicsViz
Package Short Url http://bioconductor.org/packages/multiOmicsViz/
Package Downloads Report Download Stats

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