multiOmicsViz
This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.
This is the development version of multiOmicsViz; for the stable release version, see multiOmicsViz.
Plot the effect of one omics data on other omics data along the chromosome
Bioconductor version: Development (3.19)
Calculate the spearman correlation between the source omics data and other target omics data, identify the significant correlations and plot the significant correlations on the heat map in which the x-axis and y-axis are ordered by the chromosomal location.
Author: Jing Wang <jingwang.uestc at gmail.com>
Maintainer: Jing Wang <jingwang.uestc at gmail.com>
citation("multiOmicsViz")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("multiOmicsViz")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | Software, SystemsBiology, Visualization |
| Version | 1.27.1 |
| In Bioconductor since | BioC 3.5 (R-3.4) (7 years) |
| License | LGPL |
| Depends | R (>= 3.3.2) |
| Imports | methods, parallel, doParallel, foreach, grDevices, graphics, utils, SummarizedExperiment, stats |
| System Requirements | |
| URL |
See More
| Suggests | BiocGenerics |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
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| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | |
| Windows Binary | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/multiOmicsViz |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/multiOmicsViz |
| Package Short Url | https://bioconductor.org/packages/multiOmicsViz/ |
| Package Downloads Report | Download Stats |