mQTL.NMR

DOI: 10.18129/B9.bioc.mQTL.NMR    

This is the development version of mQTL.NMR; for the stable release version, see mQTL.NMR.

Metabolomic Quantitative Trait Locus Mapping for 1H NMR data

Bioconductor version: Development (3.8)

mQTL.NMR provides a complete mQTL analysis pipeline for 1H NMR data. Distinctive features include normalisation using most-used approaches, peak alignment using RSPA approach, dimensionality reduction using SRV and binning approaches, and mQTL analysis for animal and human cohorts.

Author: Lyamine Hedjazi and Jean-Baptiste Cazier

Maintainer: Lyamine Hedjazi <mqtl at ican-institute.org>

Citation (from within R, enter citation("mQTL.NMR")):

Installation

To install this package, start R and enter:

if (!require("BiocManager"))
    install.packages("BiocManager")
BiocManager::install("mQTL.NMR", version = "devel")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("mQTL.NMR")

 

PDF R Script Frequently Asked Questions
PDF R Script How to use the mQTL.NMR package
PDF   Reference Manual

Details

biocViews Cheminformatics, Genetics, Metabolomics, SNP, Software
Version 1.15.0
In Bioconductor since BioC 3.0 (R-3.1) (4 years)
License Artistic-2.0
Depends R (>= 2.15.0)
Imports qtl, GenABEL, MASS, outliers, graphics, stats, utils
LinkingTo
Suggests BiocStyle
SystemRequirements
Enhances
URL http://www.ican-institute.org/tools/
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package mQTL.NMR_1.15.0.tar.gz
Windows Binary mQTL.NMR_1.15.0.zip
Mac OS X 10.11 (El Capitan) mQTL.NMR_1.15.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/mQTL.NMR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/mQTL.NMR
Package Short Url http://bioconductor.org/packages/mQTL.NMR/
Package Downloads Report Download Stats

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